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A Sea of Cortez Yacht Charter Itinerary offers one of the most spectacular cruising experiences in North America. Departing from Cabo San Lucas, this 10-day route explores the dramatic coastline of Baja California, where desert landscapes meet turquoise waters and rich marine biodiversity.
Often described by Jacques Cousteau as “the aquarium of the world,” the Sea of Cortez delivers an exceptional combination of secluded anchorages, wildlife encounters and vast open horizons. Designed for luxury motor yachts and high-end sailing vessels, this itinerary balances relaxed cruising distances with unforgettable natural discoveries.
This Sea of Cortez Yacht Charter Itinerary follows a circular route from Cabo San Lucas into the heart of Baja California’s most pristine islands and marine reserves. Unlike Mediterranean cruising, this region offers wide-open spaces, minimal maritime traffic and raw, untouched beauty.
Guests can explore Espiritu Santo Island, San Francisco Island and remote desert coves where crystal-clear waters invite swimming, paddleboarding and snorkeling among tropical fish and sea lions.
For a broader regional overview, explore our Baja California Yacht Charter page.
The Sea of Cortez is internationally renowned for its biodiversity. Depending on the season, guests may encounter:
Whale sharks
Humpback whales
Dolphins
Sea lions
Mobula rays
This itinerary offers exceptional snorkeling and diving conditions, particularly around volcanic rock formations and protected bays.
Cruising distances are well balanced to maintain comfort and flexibility. Mornings often begin with calm seas ideal for water activities, while afternoons allow smooth repositioning toward the next anchorage.
The route is perfectly suited to 30m+ motor yachts, explorer yachts and well-equipped sailing yachts.
Browse available vessels via Search Yachts for Charter.
The best time to follow this Sea of Cortez Yacht Charter Itinerary is between November and May. During this period, temperatures are pleasant, humidity is low and sea conditions are generally stable.
Winter months (December to March) offer prime whale-watching opportunities, while spring provides warm water temperatures and excellent snorkeling visibility.
From June to October, temperatures rise significantly and tropical systems may affect certain cruising windows. While still navigable, summer cruising requires experienced captains and flexible routing.
Cabo San Lucas serves as the primary embarkation and disembarkation port. The marina is well equipped for large yachts and accessible via Los Cabos International Airport, which offers direct international connections.
This circular route avoids complex border formalities and simplifies charter logistics.
Distances between anchorages are moderate, with a combination of coastal cruising and short open-water crossings. Weather patterns are influenced by Pacific systems, but the Gulf side generally offers more protected waters.
Experienced captains carefully monitor seasonal winds and local sea conditions to optimize comfort and safety.
This Sea of Cortez Yacht Charter Itinerary is particularly well suited to:
Explorer yachts
Long-range motor yachts
Luxury sailing yachts
Stabilizers and high-capacity water toys enhance the experience in remote anchorages.
Area Description: Cabo San Lucas is a dynamic resort town and gateway to the Sea of Cortez. Famous for its iconic Arch, luxury marina, and nightlife, it is a popular destination for superyachts. The waters here are calm and ideal for cruising, with plenty of anchorages nearby.
Highlights & Activities: Cruise by tender to visit the Arch, Lover’s Beach, and Pelican Rock for snorkeling. Hiking enthusiasts can venture to Mt. Solmar for panoramic views of Cabo and the Sea of Cortez.
Marina: Marina Cabo San Lucas – Offers secure berths, fueling, and easy access to town.
Dining: Edith’s – A renowned Mexican coastal restaurant that combines Baja’s fresh flavors with a sophisticated ambiance.
Area Description: Cabo Pulmo National Marine Park is an ecological treasure, protecting one of North America’s oldest coral reefs. Known for its crystal-clear waters and abundant marine life, Cabo Pulmo is ideal for water activities. The anchorage here is calm but basic, with no formal marina facilities due to the park’s strict conservation regulations.
Highlights & Activities: Dive among vibrant coral reefs and swim with whale sharks. The park’s preservation status means excellent visibility and abundant marine life.
Anchorage: Anchor offshore near the reef in calm weather; be mindful of environmental regulations.
Dining: Onboard dining recommended, as dining options are limited in this protected area.
Area Description: Isla Cerralvo, also known as Jacques Cousteau Island, is an uninhabited paradise for sport fishing and diving. Anchoring in La Ventana offers convenient overnight accommodations and access to the village’s restaurants and kite-surfing spots.
Highlights & Activities: Dive, fish, or snorkel in the rich waters of Isla Cerralvo. In La Ventana, the Punta Arena Lighthouse Trail provides a scenic coastal hike.
Anchorage: Anchor near La Ventana or in Cerralvo’s protected bays.
Dining: Marlin Azul – This laid-back beachside restaurant in La Ventana is known for its fresh seafood and welcoming atmosphere.

Area Description: La Paz, the capital of Baja California Sur, is a vibrant city with a bustling waterfront and rich local culture. Known for its malecón, La Paz is a gateway to the region’s marine parks and islands.
Highlights & Activities: Walk along the malecón, visit the Whale Museum, or swim with whale sharks. The El Mogote Sand Dunes near La Paz offer hikers a stunning desert-meets-ocean experience.
Marina: Marina CostaBaja – Offers luxury facilities, full services, and secure mooring, with easy access to downtown La Paz.
Dining: Sorstis – A fine dining restaurant with Mediterranean-Baja fusion dishes, set in an elegant courtyard in La Paz.

Area Description: Isla Espiritu Santo, a UNESCO World Heritage Site, is known for its dramatic red cliffs, sandy beaches, and clear waters. This uninhabited island is home to various endemic species and offers incredible opportunities for snorkelling and exploring natural landscapes.
Highlights & Activities: Snorkel with sea lions at Los Islotes, kayak through hidden coves, and hike the El Mechudo Trail for panoramic views across the island.
Anchorage: Anchor in Ensenada Grande or Candelero Bay, both sheltered spots with calm waters.
Dining: Onboard dining allows more time to explore the island’s unique landscapes.
Area Description: Isla Espiritu Santo’s untouched beauty makes it ideal for a day filled with exploration. With its secluded beaches, azure waters, and vibrant wildlife, Espiritu Santo is the epitome of a desert island paradise.
Highlights & Activities: Enjoy diving, snorkelling, and beachcombing, or take a scenic hike along the Punta Lobos Trail to capture the island’s stunning vistas.
Anchorage: Remain anchored in Ensenada Grande or move to another bay like Bahia San Gabriel for variety.
Dining: Clam Shack by the Beach – This pop-up dining option offers fresh seafood in a beachside setting.
Area Description: Isla San Francisco is a small, uninhabited island known for its crescent-shaped bay, which is perfect for anchoring. The island’s pristine beaches and rugged hills make it ideal for hiking and snorkelling.
Highlights & Activities: Swim and snorkel in the crystal-clear bay, or hike the Ridge Trail for panoramic views of the Sea of Cortez and surrounding islands.
Anchorage: Anchor in the crescent-shaped bay for calm waters and excellent access to the beach.
Dining: Enjoy an exclusive beach picnic, prepared by your yacht’s chef, on the island’s stunning beach.
Area Description: Loreto is one of Baja’s oldest settlements, blending rich history and Mexican culture with scenic coastal beauty. The town’s colonial architecture and nearby marine park make it a captivating destination for nature lovers.
Highlights & Activities: Visit the Misión de Nuestra Señora de Loreto, explore the town center, or snorkel in the Loreto Bay National Marine Park. Hikers will enjoy Tabor Canyon, a trail with impressive rock formations and lush vegetation.
Marina: Marina Puerto Escondido – Located just south of Loreto, this marina offers full amenities, including fuel, provisions, and secure berthing.
Dining: Orlando’s Mexican Cocina – A charming restaurant offering fresh, authentic Mexican cuisine with local ingredients.
Area Description: Return to Isla Espiritu Santo for a final experience of its secluded beaches, dramatic cliffs, and rich biodiversity.
Highlights & Activities: Snorkel, kayak, or relax with a sunset beach picnic. The Bahia San Gabriel Trail offers a scenic hike with sweeping coastline views and nearby islets.
Anchorage: Bahia San Gabriel provides a sheltered anchorage with access to beaches and hiking trails.
Dining: Onboard Baja-inspired dining prepared by the yacht chef, ideal for a memorable final evening in the Sea of Cortez.
Area Description: The journey back to Los Cabos offers scenic views of the rugged Baja coastline, perfect for reflecting on the trip. Los Cabos is known for its luxurious marina, lively town, and expansive beaches, offering a fitting conclusion to the Sea of Cortez adventure.
Highlights & Activities: Unwind with onboard spa services or enjoy the scenic coastal views as you return to Cabo.
Marina: Marina Cabo San Lucas – A full-service marina located in Cabo’s luxury resort area.

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